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Agar work

2 to 4 weeks per isolation round

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Growing mycelium on nutrient agar in petri dishes, to isolate a clean vigorous culture from a contaminated or mixed one, and to store genetics indefinitely. It is the step that turns cultivation from repeatedly buying syringes into keeping a strain.

What you need

  • Light malt extract, agar agar powder
  • Petri dishes, 90 mm, sterile or reusable glass
  • Pressure cooker
  • Scalpel or inoculation loop
  • Still air box or laminar flow hood
  • Parafilm or micropore tape

Procedure

  1. 01

    Make the medium

    Light malt extract agar is the standard general-purpose medium. Mix, then pressure cook in a loosely capped bottle rather than in the dishes.

    Light malt extract
    20 g per litre
    Agar agar
    20 g per litre
    Water
    1 litre
    Sterilise
    15 psi, 30 minutes

    Watch out: Agar settles hard at the bottom of the bottle. Swirl before pouring or the last dishes will not set.

  2. 02

    Pour plates

    Pour at around 60 °C inside a still air box. Hotter and condensation floods the lid; cooler and it sets in the neck of the bottle. Let plates set undisturbed, then leave inverted for a day so any condensation clears.

    Pour temperature
    ~60 °C, bottle warm to hold, not hot
    Volume per dish
    15–20 ml, about 5 mm deep
    Set
    1 hour, then invert 24 hours
  3. 03

    Inoculate

    Transfer spores, a spore-syringe droplet, or a tissue fragment from a healthy mushroom's interior. Tissue cloning preserves an exact genetic individual; spores produce a new genetic mix each time. For spores, use a clean print kept covered and dry, flame the tool and let it cool, touch it to the print so it picks up only a few spores, and streak lightly. Open the plate only as far as the transfer needs, then close, label with date and source, and incubate upside down. Watch daily for the first week: small white points or fuzzy patches are germination, while fast fluffy growth that changes colour or glossy wet spots are contamination, not your culture.

    Incubate
    24–26 °C, dark
    Germination visible
    2–5 days
    Spores per transfer
    A few, not a smear

    Watch out: Too many spores crowd the plate and the sectors cannot be told apart. A hot tool kills the spores, so touch it to clean agar first if unsure.

  4. 04

    Isolate a sector

    A germinated spore plate contains many genetically distinct mycelia competing. A basidiospore germinates into a monokaryon, which does not fruit on its own; compatible monokaryons must fuse into a dikaryon before the culture can make mushrooms. So the plate is a mixture that varies in speed, texture and vigour, and some sectors will grow poorly or fail to fruit. Cut a wedge from the leading edge of the fastest, cleanest, most evenly rhizomorphic sector and move it to a fresh plate. Repeat two or three times until growth across the plate is uniform.

    Rounds
    2–3 transfers
    Cut from
    The leading edge, never the centre
    Wedge size
    5 mm

    Watch out: Cutting from the middle of a colony transfers older, slower mycelium. The edge is the growing front.

  5. 05

    Store

    Seal a clean isolated plate with parafilm and refrigerate. Alternatively transfer a wedge to sterile water in a vial for long-term storage, years rather than months.

    Refrigerated plate
    4 °C, 6–12 months
    Agar in sterile water
    4 °C, several years

Troubleshooting

What you seeWhat it isWhat to do
Plates set cloudy or never setAgar not dissolved before sterilising, or the ratio was wrong.Swirl thoroughly and verify by weight rather than by eye.
Condensation floods the plate surfacePoured too hot, or dishes stacked while warm.Invert the plates. Pour cooler next time.
Bacterial colonies, shiny wet dots, sometimes yellowAirborne or from the transfer tool.Flame the scalpel between every cut and let it cool. Move the still air box away from foot traffic.
Spore plate shows no growth after a week or moreA hot tool killed the spores, the print is old, or the spores are not viable.Test the cooled tool on clean agar before use and try a fresh print. Give it the full week before judging.
A spore plate is contaminated across the whole plateThe print, the tool or the air carried contaminants, and a contaminant on a spore plate usually spreads.Start again from a cleaner source rather than trying to save the plate. Keep the print covered and store it away from air currents.
Mycelium grows as a thin flat sheet with no textureTomentose rather than rhizomorphic growth. Often a weaker or older isolate.Select a different sector. Rhizomorphic, ropey growth generally spawns and fruits better.

How we research this: sources, evidence grading, review and updates.